{bio,tools}[foss/2025b,gompi/2025b] ModPipe v2.3.1, HH-suite v3.3.0-2025-08-12 by pavelToman · Pull Request #23852 · easybuilders/easybuild-easyconfigs

pavelToman · 2025-09-11T17:36:16Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#597
requires:

Fix setting of component directories when using buildininstalldir easybuild-easyblocks#4065
export KEY_MODELLER before installation -> can not be tested on JSC for now
- you can get Modeller license key from: https://salilab.org/modeller/registration.html

…e-3.3.0-2025-08-12-gompi-2025b.eb

github-actions · 2025-09-11T17:36:42Z

Updated software `HH-suite-3.3.0-20250812-gompi-2025b.eb`

Diff against HH-suite-3.3.0-gompi-2023b.eb

easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2023b.eb

diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2023b.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-20250812-gompi-2025b.eb
index 0ba201fa12..0cbcd79a32 100644
--- a/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2023b.eb
+++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-20250812-gompi-2025b.eb
@@ -9,7 +9,6 @@
 # This work implements a part of the HPCBIOS project and is a component of the policy:
 # https://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
 ##
-# Updated to use gompi-2020b toolchain:
 # Contribution from the NIHR Biomedical Research Centre
 # Guy's and St Thomas' NHS Foundation Trust and King's College London
 # uploaded by J. Sassmannshausen
@@ -17,34 +16,38 @@
 easyblock = 'CMakeMake'
 
 name = 'HH-suite'
-version = '3.3.0'
+version = '3.3.0-20250812'
+local_commit = '43095e4'
 
 homepage = 'https://github.com/soedinglab/hh-suite'
 description = """The HH-suite is an open-source software package
  for sensitive protein sequence searching based on the pairwise
  alignment of hidden Markov models (HMMs)."""
 
-toolchain = {'name': 'gompi', 'version': '2023b'}
+toolchain = {'name': 'gompi', 'version': '2025b'}
 
 source_urls = ['https://github.com/soedinglab/hh-suite/archive/']
-sources = ['v%(version)s.tar.gz']
-patches = [
-    'HH-suite-3.3.0_fix_missing_cstdint.patch',
-]
-checksums = [
-    {'v3.3.0.tar.gz': 'dd67f7f3bf601e48c9c0bc4cf1fbe3b946f787a808bde765e9436a48d27b0964'},
-    {'HH-suite-3.3.0_fix_missing_cstdint.patch': 'd945608333e6bcb27e6391c5519345f36c1e8aeb6a100ded320aa940a81b14c9'},
-]
+sources = [{
+    'download_filename': f'{local_commit}.tar.gz',
+    'filename': f'%(name)s-%(version)s-{local_commit}.tar.gz',
+}]
+checksums = ['d9145fe93d1e6d35ebad9604998356406fdfd91239d949b19a5e60bc641d04d0']
 
 builddependencies = [
-    ('CMake', '3.27.6'),
+    ('CMake', '4.0.3'),
 ]
 
 dependencies = [
-    ('Perl', '5.38.0'),
-    ('Python', '3.11.5'),
+    ('Perl', '5.40.2'),
+    ('Python', '3.13.5'),
 ]
 
+# fix cmake policy version - CMAKE v4 is not compatible with versions < v3.5
+configopts = '-DCMAKE_POLICY_VERSION_MINIMUM=3.5'
+
+# some software that requires HH-suite (like ModPipe) looks for script in lib/hh/scripts
+postinstallcmds = ["mkdir -p %(installdir)s/lib/hh && ln -s %(installdir)s/scripts %(installdir)s/lib/hh/scripts"]
+
 _binaries_help = [
     'cstranslate', 'cstranslate_mpi', 'hhalign', 'hhalign_mpi', 'hhalign_omp', 'hhconsensus',
     'hhfilter', 'hhmake'
@@ -75,7 +78,7 @@ sanity_check_paths = {
              ['bin/%s' % x for x in _binaries_v] +
              ['bin/%s' % x for x in _binaries_helpless] +
              ['scripts/%s' % y for y in _scriptfiles],
-    'dirs': ['data', 'scripts']
+    'dirs': ['data', 'scripts', 'lib/hh']
 }
 
 sanity_check_commands = ['%s --help' % x for x in _binaries_help]

Diff against HH-suite-3.3.0-gompi-2023a.eb

easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2023a.eb

diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2023a.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-20250812-gompi-2025b.eb
index c725a0bd92..0cbcd79a32 100644
--- a/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2023a.eb
+++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-20250812-gompi-2025b.eb
@@ -9,7 +9,6 @@
 # This work implements a part of the HPCBIOS project and is a component of the policy:
 # https://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
 ##
-# Updated to use gompi-2020b toolchain:
 # Contribution from the NIHR Biomedical Research Centre
 # Guy's and St Thomas' NHS Foundation Trust and King's College London
 # uploaded by J. Sassmannshausen
@@ -17,28 +16,38 @@
 easyblock = 'CMakeMake'
 
 name = 'HH-suite'
-version = '3.3.0'
+version = '3.3.0-20250812'
+local_commit = '43095e4'
 
 homepage = 'https://github.com/soedinglab/hh-suite'
 description = """The HH-suite is an open-source software package
  for sensitive protein sequence searching based on the pairwise
  alignment of hidden Markov models (HMMs)."""
 
-toolchain = {'name': 'gompi', 'version': '2023a'}
+toolchain = {'name': 'gompi', 'version': '2025b'}
 
 source_urls = ['https://github.com/soedinglab/hh-suite/archive/']
-sources = ['v%(version)s.tar.gz']
-checksums = ['dd67f7f3bf601e48c9c0bc4cf1fbe3b946f787a808bde765e9436a48d27b0964']
+sources = [{
+    'download_filename': f'{local_commit}.tar.gz',
+    'filename': f'%(name)s-%(version)s-{local_commit}.tar.gz',
+}]
+checksums = ['d9145fe93d1e6d35ebad9604998356406fdfd91239d949b19a5e60bc641d04d0']
 
 builddependencies = [
-    ('CMake', '3.26.3'),
+    ('CMake', '4.0.3'),
 ]
 
 dependencies = [
-    ('Perl', '5.36.1'),
-    ('Python', '3.11.3'),
+    ('Perl', '5.40.2'),
+    ('Python', '3.13.5'),
 ]
 
+# fix cmake policy version - CMAKE v4 is not compatible with versions < v3.5
+configopts = '-DCMAKE_POLICY_VERSION_MINIMUM=3.5'
+
+# some software that requires HH-suite (like ModPipe) looks for script in lib/hh/scripts
+postinstallcmds = ["mkdir -p %(installdir)s/lib/hh && ln -s %(installdir)s/scripts %(installdir)s/lib/hh/scripts"]
+
 _binaries_help = [
     'cstranslate', 'cstranslate_mpi', 'hhalign', 'hhalign_mpi', 'hhalign_omp', 'hhconsensus',
     'hhfilter', 'hhmake'
@@ -69,7 +78,7 @@ sanity_check_paths = {
              ['bin/%s' % x for x in _binaries_v] +
              ['bin/%s' % x for x in _binaries_helpless] +
              ['scripts/%s' % y for y in _scriptfiles],
-    'dirs': ['data', 'scripts']
+    'dirs': ['data', 'scripts', 'lib/hh']
 }
 
 sanity_check_commands = ['%s --help' % x for x in _binaries_help]

Diff against HH-suite-3.3.0-gompi-2022a.eb

easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2022a.eb

diff --git a/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2022a.eb b/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-20250812-gompi-2025b.eb
index 1e8dd76e70..0cbcd79a32 100644
--- a/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-gompi-2022a.eb
+++ b/easybuild/easyconfigs/h/HH-suite/HH-suite-3.3.0-20250812-gompi-2025b.eb
@@ -9,7 +9,6 @@
 # This work implements a part of the HPCBIOS project and is a component of the policy:
 # https://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
 ##
-# Updated to use gompi-2020b toolchain:
 # Contribution from the NIHR Biomedical Research Centre
 # Guy's and St Thomas' NHS Foundation Trust and King's College London
 # uploaded by J. Sassmannshausen
@@ -17,28 +16,38 @@
 easyblock = 'CMakeMake'
 
 name = 'HH-suite'
-version = '3.3.0'
+version = '3.3.0-20250812'
+local_commit = '43095e4'
 
 homepage = 'https://github.com/soedinglab/hh-suite'
 description = """The HH-suite is an open-source software package
  for sensitive protein sequence searching based on the pairwise
  alignment of hidden Markov models (HMMs)."""
 
-toolchain = {'name': 'gompi', 'version': '2022a'}
+toolchain = {'name': 'gompi', 'version': '2025b'}
 
 source_urls = ['https://github.com/soedinglab/hh-suite/archive/']
-sources = ['v%(version)s.tar.gz']
-checksums = ['dd67f7f3bf601e48c9c0bc4cf1fbe3b946f787a808bde765e9436a48d27b0964']
+sources = [{
+    'download_filename': f'{local_commit}.tar.gz',
+    'filename': f'%(name)s-%(version)s-{local_commit}.tar.gz',
+}]
+checksums = ['d9145fe93d1e6d35ebad9604998356406fdfd91239d949b19a5e60bc641d04d0']
 
 builddependencies = [
-    ('CMake', '3.23.1'),
+    ('CMake', '4.0.3'),
 ]
 
 dependencies = [
-    ('Perl', '5.34.1'),
-    ('Python', '3.10.4'),
+    ('Perl', '5.40.2'),
+    ('Python', '3.13.5'),
 ]
 
+# fix cmake policy version - CMAKE v4 is not compatible with versions < v3.5
+configopts = '-DCMAKE_POLICY_VERSION_MINIMUM=3.5'
+
+# some software that requires HH-suite (like ModPipe) looks for script in lib/hh/scripts
+postinstallcmds = ["mkdir -p %(installdir)s/lib/hh && ln -s %(installdir)s/scripts %(installdir)s/lib/hh/scripts"]
+
 _binaries_help = [
     'cstranslate', 'cstranslate_mpi', 'hhalign', 'hhalign_mpi', 'hhalign_omp', 'hhconsensus',
     'hhfilter', 'hhmake'
@@ -69,7 +78,7 @@ sanity_check_paths = {
              ['bin/%s' % x for x in _binaries_v] +
              ['bin/%s' % x for x in _binaries_helpless] +
              ['scripts/%s' % y for y in _scriptfiles],
-    'dirs': ['data', 'scripts']
+    'dirs': ['data', 'scripts', 'lib/hh']
 }
 
 sanity_check_commands = ['%s --help' % x for x in _binaries_help]

pavelToman · 2025-09-11T17:42:48Z

Test report by @pavelToman
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node4004.donphan.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 570.133.20, Python 3.9.18
See https://gist.github.com/pavelToman/53ac52b5da05fdac9a6792e0b78e5f54 for a full test report.

pavelToman · 2025-09-11T17:48:44Z

Test report by @pavelToman
SUCCESS
Build succeeded for 4 out of 4 (2 easyconfigs in total)
node4203.shinx.os - Linux RHEL 9.4, x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.18
See https://gist.github.com/pavelToman/1616f0a492c62d1363abfcbd474651cd for a full test report.

pavelToman · 2025-09-12T11:20:36Z

Test report by @pavelToman
SUCCESS
Build succeeded for 8 out of 8 (2 easyconfigs in total)
node3905.accelgor.os - Linux RHEL 9.4, x86_64, AMD EPYC 7413 24-Core Processor, Python 3.9.18
See https://gist.github.com/pavelToman/11fa76accb1d4c92ebac2c6643816552 for a full test report.

easybuild/easyconfigs/m/ModPipe/ModPipe-2.3.1-foss-2025b-Linux_x86_64.eb

Co-authored-by: Kenneth Hoste <[email protected]>

pavelToman · 2025-10-10T11:23:09Z

Test report by @pavelToman
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node4210.shinx.os - Linux RHEL 9.6, x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.21
See https://gist.github.com/pavelToman/d03895f63766fcc49fcd669e98f4b657 for a full test report.

pavelToman · 2025-10-10T11:23:12Z

Test report by @pavelToman
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node4006.donphan.os - Linux RHEL 9.6, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 580.82.07, Python 3.9.21
See https://gist.github.com/pavelToman/e8724d831f383cb009bf1340fdff77f3 for a full test report.

boegel · 2025-12-15T13:12:43Z

There's an (expected) error when trying to install this without providing a license for Modeller:

Traceback (most recent call last):
  File "<stdin>", line 5, in <module>
  File "/software/ModPipe/2.3.1-foss-2025b-Linux_x86_64/modpipe-2.3.1/ext/mod/modlib/modeller/__init__.py", line 102, in <modull
e>
    _modeller.mod_start()
    ~~~~~~~~~~~~~~~~~~~^^
_modeller.ModellerError: check_lice_E> Invalid license key:
Go to https://salilab.org/modeller/ to get a license key,
and then set the 'license' variable to it in the file
/software/ModPipe/2.3.1-foss-2025b-Linux_x86_64/modpipe-2.3.1/ext/mod/modlib/modeller/config.py

@pavelToman There's no hint at all here on how to fix this, I think it can be done by setting some environment variable?

pavelToman · 2025-12-15T15:50:20Z

There's an (expected) error when trying to install this without providing a license for Modeller:

Traceback (most recent call last):
  File "<stdin>", line 5, in <module>
  File "/software/ModPipe/2.3.1-foss-2025b-Linux_x86_64/modpipe-2.3.1/ext/mod/modlib/modeller/__init__.py", line 102, in <modull
e>
    _modeller.mod_start()
    ~~~~~~~~~~~~~~~~~~~^^
_modeller.ModellerError: check_lice_E> Invalid license key:
Go to https://salilab.org/modeller/ to get a license key,
and then set the 'license' variable to it in the file
/software/ModPipe/2.3.1-foss-2025b-Linux_x86_64/modpipe-2.3.1/ext/mod/modlib/modeller/config.py

@pavelToman There's no hint at all here on how to fix this, I think it can be done by setting some environment variable?

I add a build info about the KEY_MODELLER

…asyconfigs into 20250911193612_new_pr_ModPipe231

laraPPr · 2026-02-16T11:01:06Z

@pavelToman Can you take a look at the missing BLAST dependency that is causing the CI to fail?

pavelToman · 2026-02-16T12:42:21Z

@pavelToman Can you take a look at the missing BLAST dependency that is causing the CI to fail?

BLAST-2.2.26-Linux_x86_64 was archived last month...

laraPPr · 2026-02-16T13:47:28Z

@boegelbot please test @ jsc-zen3

boegelbot · 2026-02-16T13:50:13Z

@laraPPr: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23852 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23852 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 9700

Test results coming soon (I hope)...

Details

- notification for comment with ID 3908590506 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2026-02-16T13:57:52Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 3 (total: 7 mins 16 secs) (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.23
See https://gist.github.com/boegelbot/6ed9f648ae31286d726c9f6d23ea84f0 for a full test report.

laraPPr · 2026-02-16T13:59:01Z

Test report by @laraPPr
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
node4228.shinx.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.21
See https://gist.github.com/laraPPr/4f61783f5831c965bbe324b20669e8ec for a full test report.

laraPPr · 2026-02-16T14:00:20Z

The newer blast seem to be causing an issue

pavelToman · 2026-02-16T14:41:54Z

Test report by @boegelbot FAILED Build succeeded for 2 out of 3 (total: 7 mins 16 secs) (2 easyconfigs in total) jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.7, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.23 See https://gist.github.com/boegelbot/6ed9f648ae31286d726c9f6d23ea84f0 for a full test report.

ERROR EasyBuild encountered an error: 
Failed to change from /project/60006/boegelbot/rocky9/zen3/software/ModPipe/2.3.1-foss-2025b-Linux_x86_64/modeller-10.7 to /tmp/boegelbot/ModPipe/2.3.1/foss-2025b-Linux_x86_64: 
[Errno 2] No such file or directory: '/tmp/boegelbot/ModPipe/2.3.1/foss-2025b-Linux_x86_64' (at easybuild/easybuild-framework/easybuild/tools/filetools.py:490 in change_dir)

@Flamefire @Thyre could be this weird error caused by recent changes to the easyblocks?
I hit the same error on donphan with the latest develop commits.
But @laraPPr on v5.1.2 does not get this error at all.

pavelToman · 2026-02-16T14:45:20Z

The newer blast seem to be causing an issue

In the documentation of ModPipe there is tested with BLAST 2.2.13 so probably 2.11.0 is too new for ModPipe. I can add older BLAST to components

Flamefire · 2026-02-16T15:20:26Z

@Flamefire @Thyre could be this weird error caused by recent changes to the easyblocks?

Not aware of any related change. What is causing the issue is buildinstalldir being set for a bundle:

EasyBlock:run_all_steps calls EasyBlock.post_init
post_init sets builddir to installdir
EasyBlock.__init__ had set component.builddir = builddir already -> Not reflected

I'm not sure why that isn't an issue in 5.1.2.

Edit: easybuilders/easybuild-easyblocks#4037 moved the above to __init__ in easybuilders/easybuild-easyblocks#4037 (@Thyre )
Proposed fix: easybuilders/easybuild-easyblocks#4065

Flamefire · 2026-02-16T15:45:12Z

Test report by @Flamefire
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#4065
FAILED
Build succeeded for 1 out of 2 (total: 6 mins 42 secs) (2 easyconfigs in total)
i8036 - Linux Rocky Linux 9.6, x86_64, AMD EPYC 7352 24-Core Processor (zen2), 8 x NVIDIA NVIDIA A100-SXM4-40GB, 580.65.06, Python 3.9.21
See https://gist.github.com/Flamefire/c9b53750f48d304b5bc6e31afea2403c for a full test report.

Got beyond that point to

** Could not find external BLAST binary 'formatdb'

…-2.3.1-foss-2025b.eb

pavelToman · 2026-02-17T12:17:55Z

Test report by @Flamefire Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#4065 FAILED Build succeeded for 1 out of 2 (total: 6 mins 42 secs) (2 easyconfigs in total) i8036 - Linux Rocky Linux 9.6, x86_64, AMD EPYC 7352 24-Core Processor (zen2), 8 x NVIDIA NVIDIA A100-SXM4-40GB, 580.65.06, Python 3.9.21 See https://gist.github.com/Flamefire/c9b53750f48d304b5bc6e31afea2403c for a full test report.

Got beyond that point to

** Could not find external BLAST binary 'formatdb'

BLAST problem should be fixed now

Flamefire · 2026-02-17T12:52:05Z

BLAST problem should be fixed now

Did it work for you? The Tarball component in a bundle with buildininstalldir doesn't really work well.

Also I'm not sure it is a good idea to use a component which we also have as an easyconfig as that might cause unexpected incompatibilities when a user loads both

pavelToman · 2026-02-17T14:14:36Z

BLAST problem should be fixed now

Did it work for you? The Tarball component in a bundle with buildininstalldir doesn't really work well.

Also I'm not sure it is a good idea to use a component which we also have as an easyconfig as that might cause unexpected incompatibilities when a user loads both

No it did not. I tough I am still hitting the bundle.py problem.
Now it should works with 7c6328f.

Still not optimal, since it creates not used blast dir in installdir.
With 'install_type': 'merge' it is failing with:

= FAILED: Installation ended unsuccessfully: Failed to copy file 
/scratch/gent/vo/001/gvo00117/easybuild/RHEL9/cascadelake-ampere-ib/software/ModPipe/2.3.1-foss-2025b/modpipe-2.3.1/python/int to 
/scratch/gent/vo/001/gvo00117/easybuild/RHEL9/cascadelake-ampere-ib/software/ModPipe/2.3.1-foss-2025b/modpipe-2.3.1/python/int/int: 
[Errno 21] Is a directory: 
'/scratch/gent/vo/001/gvo00117/easybuild/RHEL9/cascadelake-ampere-ib/software/ModPipe/2.3.1-foss-2025b/modpipe-2.3.1/python/int'

pavelToman · 2026-02-17T14:16:03Z

@laraPPr could you test this PR again, please, should be ok now

laraPPr · 2026-02-17T14:22:50Z

Test report by @laraPPr
SUCCESS
Build succeeded for 2 out of 2 (total: 2 mins 46 secs) (2 easyconfigs in total)
node3593.doduo.os - Linux RHEL 9.6 (Plow), x86_64, AMD EPYC 7552 48-Core Processor, Python 3.9.21
See https://gist.github.com/laraPPr/85f0dba481bd156034aa53ac74a993b7 for a full test report.

Flamefire · 2026-02-17T14:48:03Z

Still not optimal, since it creates not used blast dir in installdir.

Maybe we can copy the python package to install dir and cd to it in the preinstallopts?

BTW: Doesn't work: They create a runpyscript.py that resets PYTHONPATH & LD_LIBRARY_PATH and generally looks very hackish. Similar: runscript.sh

easybuild/easyconfigs/m/ModPipe/ModPipe-2.3.1-foss-2025b.eb

pavelToman · 2026-02-24T13:39:10Z

Test report by @pavelToman
SUCCESS
Build succeeded for 2 out of 2 (total: 2 mins 41 secs) (2 easyconfigs in total)
node4012.donphan.os - Linux RHEL 9.6, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 580.95.05, Python 3.9.21
See https://gist.github.com/pavelToman/89f8c3b29840b85735c712f63834313e for a full test report.

pavelToman · 2026-02-24T13:39:25Z

Test report by @pavelToman
SUCCESS
Build succeeded for 2 out of 2 (total: 2 mins 56 secs) (2 easyconfigs in total)
node4203.shinx.os - Linux RHEL 9.6, x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.21
See https://gist.github.com/pavelToman/e835a12adb76d6a5baea2d38edb2e71d for a full test report.

pavelToman · 2026-02-24T15:14:29Z

@laraPPr could you test this again, please?

adding easyconfigs: ModPipe-2.3.1-foss-2025b-Linux_x86_64.eb, HH-suit…

efd0727

…e-3.3.0-2025-08-12-gompi-2025b.eb

pavelToman added new update labels Sep 11, 2025

pavelToman mentioned this pull request Sep 11, 2025

ModPipe vscentrum/vsc-software-stack#597

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Update ModPipe-2.3.1-foss-2025b-Linux_x86_64.eb - fix whitespace

80fed37

update modeller install script

ae154b7

Thyre added the 2025b issues & PRs related to 2025b common toolchains label Sep 12, 2025

boegel requested changes Sep 23, 2025

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Apply suggestion from @boegel

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Co-authored-by: Kenneth Hoste <[email protected]>

pavelToman mentioned this pull request Sep 24, 2025

{bio}[GCC/12.3.0] Modeller v10.7 #23988

Merged

update ec for ModPipe - modeller as component

8480454

boegel changed the title ~~{bio,tools}[foss/2025b,gompi/2025b] ModPipe v2.3.1, HH-suite v3.3.0-2025-08-12 w/ Linux_x86_64~~ {bio,tools}[foss/2025b,gompi/2025b] ModPipe v2.3.1, HH-suite v3.3.0-2025-08-12 Dec 15, 2025

boegel modified the milestones: next release (5.2.0), release after 5.2.0 Dec 15, 2025

boegel and others added 2 commits December 15, 2025 14:12

tweak datestamp format used for HH-suite 3.3.0-20250812

440e582

Update ModPipe-2.3.1-foss-2025b-Linux_x86_64.eb - build info

6686295

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

5a4ec5a

…asyconfigs into 20250911193612_new_pr_ModPipe231

Update ModPipe-2.3.1-foss-2025b-Linux_x86_64.eb

666842e

Flamefire mentioned this pull request Feb 16, 2026

Fix setting of component directories when using buildininstalldir easybuilders/easybuild-easyblocks#4065

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Update and rename ModPipe-2.3.1-foss-2025b-Linux_x86_64.eb to ModPipe…

84120bd

…-2.3.1-foss-2025b.eb

Update ModPipe-2.3.1-foss-2025b.eb

7c6328f

boegel modified the milestones: next release (5.2.1), 5.x Feb 18, 2026

boegel reviewed Feb 23, 2026

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pavelToman and others added 3 commits February 24, 2026 10:46

fix blast component installation

48566dc

Update HH-suite-3.3.0-20250812-gompi-2025b.eb

a6c3ae6

Update HH-suite-3.3.0-20250812-gompi-2025b.eb

051b1c0

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